Community

Citation

If you use mokume in your research, please cite:

Zheng P, Audain E, Webel H, Dai C, Klein J, Hitz MP, Sachsenberg T, Bai M, Perez-Riverol Y. Ibaqpy: A scalable Python package for baseline quantification in proteomics leveraging SDRF metadata. J Proteomics. 2025;317:105440. doi: 10.1016/j.jprot.2025.105440.

Wang H, Dai C, Pfeuffer J, Sachsenberg T, Sanchez A, Bai M, Perez-Riverol Y. Tissue-based absolute quantification using large-scale TMT and LFQ experiments. Proteomics. 2023;23(20):e2300188. doi: 10.1002/pmic.202300188.

Credits

mokume is developed by the BigBio team:

• Julianus Pfeuffer
• Yasset Perez-Riverol
• Hong Wang
• Ping Zheng
• Joshua Klein
• Enrique Audain

Contributing

We welcome contributions! To get started:

1. Fork the repository
2. Create a feature branch
3. Make your changes
4. Run the test suite: pytest
5. Submit a pull request

Development Setup

git clone https://github.com/bigbio/mokume
cd mokume
pip install -e ".[all]"
pytest

License

mokume is released under the MIT License.

Links

• GitHub: github.com/bigbio/mokume
• PyPI: pypi.org/project/mokume
• Issues: github.com/bigbio/mokume/issues
• quantms Ecosystem: quantms.org